ID Gene Accession1 ID1 Species1 Accession2 ID2 Species2 Coding Identity BLASTN score BLASTN E value CNS blocks per kbp NS CNS % Total Length Function
1 chlorophyll a/b binding protein (cab1) X14794 472 ZM AF162665 797 OS 85.5 117 1E-22 14.10 16.57 2553.00 photosynthesis
2 Ferrodoxin I X83076 404 ZM AF370029 879 OS 82.7 77 6E-35 24.81 30.64 2539.00 photosynthesis
3 Ferrodoxin VI AB001386 15 ZM D30794 799 OS 80.6 66 3E-27 12.57 15.29 1511.19 photosynthesis
4 Ferrodoxin-NADP reductase Z22760 420 ZM X91806 800 OS 94.9 256 1E-64 8.84 9.60 1245.00 photosynthesis
5 Phosphoenolpyruvate carboxylase (PEPC1) X15239 370 ZM AP003052 801 OS 87.2 274 0 7.26 7.42 3168.12 photosynthesis
6 Alanine aminotransferase AF055898 35 ZM AB007404 805 OS 93.6 101 9E-48 17.47 22.44 4523.12 nitrogen metabolism
7 Nitrate reductase1 AF153448 48 ZM X15820 806 OS 90.1 846 0 2.30 2.32 5218.14 nitrogen metabolism
8 Alcohol dehydrogenase1 (Adh1-1S) X04049 470 ZM AF172282 808 OS 97.6 184 7E-99 16.34 22.41 4774.11 structural genes/enzymes
9 Alcohol dehydrogenase2 (Adh2) X02915 469 ZM AF172282 808 OS 83.1 210 0 23.42 33.18 2007.01 structural genes/enzymes
10 aldehyde dehydrogenase Rf2 AF215823 53 ZM AC084766 810 OS 84.3 210 2E-50 1.14 1.14 15744.00 structural genes/enzymes
11 aldehyde dehydrogenase rf2B AF348418 497 ZM AF462029 811 OS 81.9 230 2E-56 3.40 3.20 2649.00 structural genes/enzymes
12 Anthocyanin (A2) X55314 500 ZM AP003199 812 OS 72.8 211 0 9.70 10.36 1650.00 structural genes/enzymes
13 Bronze-2 glutathione-S-transferase U14599 348 ZM AC092749 813 OS 74.3 416 1E-113 13.60 14.30 809.00 structural genes/enzymes
14 Catalase (Cat3) L05934 307 ZM D29966 816 OS 90.9 319 0 7.22 8.43 4291.77 structural genes/enzymes
15 Catalase1 (Cat1) X60135 380 ZM D64013 814 OS 97.4 434 0 16.59 22.99 4157.89 structural genes/enzymes
16 catalase2 (Cat1) Z54358 389 ZM AF162665 797 OS 93.5 291 1E-74 11.71 14.57 2135.00 structural genes/enzymes
17 Chalcone synthase (C2) X60205 381 ZM AC087723 817 OS 64.9 69 7E-29 28.07 33.78 962.00 structural genes/enzymes
18 chalcone synthase, white pollen locus X60204 478 ZM AP003380 818 OS 74.3 198 6E-47 14.10 16.60 2553.00 structural genes/enzymes
19 cystathionine gamma-synthase AF007786 20 ZM U38199 819 OS 90.1 557 1E-155 15.96 17.90 5450.00 structural genes/enzymes
20 Cysteine proteinase inhibitor D63342 302 ZM M29259 820 OS 78.6 61 3E-24 11.61 12.49 1808.82 structural genes/enzymes
21 cytosine-5 DNA methyltransferase ZMET1 AF063403 36 ZM AC092388 830 OS 73.8 86 1E-13 26.56 20.81 3388.00 structural genes/enzymes
22 Exoglucanase precursor (exg1) AF225411 54 ZM AP003106 821 OS 78.9 38 2E-10 9.00 9.94 2333.02 structural genes/enzymes
23 heat shock protein 70 X03714 362 ZM AF432915 822 OS 80.9 373 1E-99 31.42 32.90 541.00 structural genes/enzymes
24 Heat shock protein HSP82 S59780 340 ZM Z11920 823 OS 92.7 399 0 5.29 5.82 1322.20 structural genes/enzymes
25 Hydroxy-rice glycoprotein (HRGP) X63134 382 ZM X61280 824 OS 54 51 2E-18 15.22 21.77 656.97 structural genes/enzymes
26 metallonthionein-like gene S57628 494 ZM U46159 826 OS 77.6 66 1E-07 19.02 19.80 1630.00 structural genes/enzymes
27 NADPH-dependent reductase (A1) X05068 376 ZM U70541 827 OS 81.9 159 4E-84 15.07 15.72 3052.59 structural genes/enzymes
28 Oleosin (ole16) U43930 828 ZM U43930 828 OS 87.2 232 0 8.00 11.20 999.65 structural genes/enzymes
29 Polygalacturonase (PG) X66422 390 ZM AP003140 829 OS 44.2 32 9E-07 7.78 8.20 2827.87 structural genes/enzymes
30 RAB-17 X15994 374 ZM AC092750 832 OS   114 5E-56 13.19 22.69 1137.18 structural genes/enzymes
31 Rab28 X59138 378 ZM AC099401 833 OS 73.1 99 2E-48 24.70 24.31 1012.00 structural genes/enzymes
32 Superoxide dismutase 4 (sod4) U34726 353 ZM L19435 834 OS 92.7 81 4E-36 11.61 15.17 2670.57 structural genes/enzymes
33 tapetum-specific endoxylanase AF149016 47 ZM AP003278 835 OS 93.9 918 0 16.90 33.28 2722.00 structural genes/enzymes
34 Beta-amylase (Amy2) AF068119 38 ZM L10345 836 OS 89.3 195 0 10.01 14.86 3694.73 starch metabolism
35 Brittle2 (Bt2) AF334959 67 ZM M31616 837 OS 88.7 174 3E-91 9.95 11.49 1105.29 starch metabolism
36 Cell wall invertase (incw4) AF043347 32 ZM AF155121 838 OS 82.8 241 0 7.92 7.95 3282.29 starch metabolism
37 Dull1-like starch-synthase AX085557 204 ZM X91806 800 OS 95.3 280 5E-72 19.70 25.30 609.00 starch metabolism
38 Glucose starch glycosyl transferase (Wx1) X03935 363 ZM AF141954 840 OS 87.2 163 7E-85 5.34 6.25 3184.00 starch metabolism
39 Leaf ADP-GP small subunit AF334960 68 ZM M31616 837 OS 82.7 184 3E-97 12.25 15.31 4978.70 starch metabolism
40 Shrunken2 (Sh2) M81603 330 ZM AF101045 842 OS 84.9 103 7E-49 5.71 6.71 5949.34 starch metabolism
41 Starch branching enzyme I (Sbe1) AF072724 439 ZM D10838 843 OS 82.3 503 0 12.12 30.04 5362.61 starch metabolism
42 Starch branching enzyme2a (Sbe2a) AF228486 55 ZM AB023498 844 OS   44 7E-14 7.38 5.19 4201.81 starch metabolism
43 Starch branching enzymeIIb (Sbe2b/Ae) AF072725 440 ZM From Monsanto 845 OS 85.2 98 6E-47 7.14 13.74 6862.92 starch metabolism
44 Starch synthaseI (Ss1) AF036891 25 ZM D38221 846 OS 86.8 811 0 16.03 22.88 1123.06 starch metabolism
45 Sucrose synthase (Sh1) X02382 361 ZM X64770 847 OS 96.3 138 9E-70 18.34 24.63 5562.14 starch metabolism
46 Sucrose synthase (Sus1) L29418 311 ZM AC084380 848 OS 97.4 175 9E-92 14.92 20.75 7304.64 starch metabolism
47 Sugary1 (Su1) AF030882 23 ZM AB015615 849 OS 87.5 97 1E-46 1.09 1.50 9182.70 starch metabolism
48 Alpha1-tubulin X15704* 372 ZM AF182523 780 OS 98.7 402 0 14.36 15.03 2228.79 housekeeping
49 Alpha2-tubulin. X15704* 372 ZM AF182523 781 OS 98.7 402 0 7.20 7.72 3611.74 housekeeping
50 Alpha-3-tubulin M60171 328 ZM AF182523 782 OS 95.1 316 0 10.42 10.73 2590.43 housekeeping
51 Cyclophilin. X68678 393 ZM L29469 783 OS 91.3 213 0 4.20 4.59 3570.64 housekeeping
52 H(+)-transporting ATPase (Mha1) U09989 345 ZM D31843 784 OS 90.1 116 2E-56 1.55 1.78 6454.09 housekeeping
53 Histone H3 (H3C4) M13379 319 ZM AB026295 785 OS 100 275 0 10.54 10.78 853.76 housekeeping
54 Histone H4 (H4C14) M13370 316 ZM AC073166 786 OS 100 225 0 19.42 19.90 823.92 housekeeping
55 Lactate dehydrogenase. Z11754 419 ZM D16685 787 OS 58.7 230 0 11.36 11.52 1935.99 housekeeping
56 Mus2 for DNA mismatch repair AJ238786 430 ZM AP003047 788 OS 71.5 32 3E-06 4.83 6.45 8068.00 housekeeping
57 PCNA X79065 484 ZM AF294427 789 OS 97.7 229 0 25.35 29.86 354.99 housekeeping
58 Pdc mRNA for pyruvate decarboxylase X59546 379 ZM U26660 790 OS 93.3 409 0 9.05 11.62 2211.09 housekeeping
59 Phosphoglycerate mutase Z33611 422 ZM AP003411 791 OS 94.4 98 8E-47 13.10 14.52 992.00 housekeeping
60 polyubiquitin (Ubiqutin 1) S94464 465 ZM AP003725 792 OS 72.2 503 0 6.15 8.31 3251.00 housekeeping
61 polyubiquitin2 S94466 466 ZM AF184279 793 OS 85.7 1439 0 14.15 15.40 1838.00 housekeeping
62 pyruvate decarboxylase2 AF370004 496 ZM AC121364 865 OS   105 7E-50 3.60 6.50 3345.00 housekeeping
63 pyruvate decarboxylase3 AF370006 495 ZM AC122144 831 OS 94.3 262 6E-67 13.59 15.40 5960.00 housekeeping
64 translational elongation factor EF-TuM AF264877 58 ZM AC096688 866 OS   268 2E-68 14.40 18.10 4646.00 housekeeping
65 tubulinA5 AJ420859 508 ZM AF474922 794 OS 82.6 208 2E-50 3.01 3.70 2326.00 housekeeping
66 tubulinA6 AJ420858 509 ZM D86611 795 OS 50.6 1126 0 9.08 9.00 1211.00 housekeeping
67 Calcium-dependent protein kinase (CDPK) L27484 310 ZM AP003073 850 OS 76.8 202 0 10.84 11.56 2490.38 regulatory
68 calpain-like protein (dek1) AY061804 489 ZM AP004161 867 OS   477 0 7.30 7.70 3388.00 regulatory
69 Gmlip15 (bZIP factor) D63956 304 ZM D63955 851 OS 75.8 33 2E-07 6.88 8.52 2617.00 transcription factor
70 Golden2 AF298118 64 ZM AP002855 852 OS 56.7 94 1E-43 12.41 15.82 3787.06 transcription factor
71 Indeterminate spikelet 1 (ids1) AF048900 485 ZM AP002861 853 OS   32 4E-07 10.52 10.67 665.24 transcription factor
72 Liguleless1 (lg1) AF451895 488 ZM U70541 827 OS 84.9 236 0 12.45 18.52 5944.41 transcription factor
73 Protein kinase alpha subunit (CK2) Y11649 417 ZM AB036786 858 OS 96.4 96 1E-44 7.79 8.86 6419.00 regulatory
74 putative cytosine-5 DNA methyltransferase ZMET1 AF063403 36 ZM AC092388 830 OS 73.8 86 1E-13 14.46 17.70 3388.00 regulatory
75 Receptor-like protein kinase (PK1) X67733 392 ZM AF229199 859 OS   35 2E-08 13.27 13.86 2034.27 regulatory
76 terminal ear1 AF348319 70 ZM AB058397 860 OS 92 892 0 20.91 27.70 6074.00 regulatory
77 ZEMb X91883 411 ZM AP003105 861 OS 23.7 95 1E-44 17.81 26.98 1853.02 transcription factor
78 ZMADS2 MADS-box gene AX085359 203 ZM AF345911 862 OS 53.7 53 3E-19 10.38 11.53 4335.00 transcription factor
79 Me gene expressed I immature embryo AJ224847 428 ZM AP002836 863 OS 79.6 46 6E-15 15.96 17.91 5450.00 unknown
80 A1 X05068 376 ZM AF010283 531 SB 85.2     2.00 7.11   structural gene/enzymes
81 Adh1 X04049 470 ZM X04049 470 SB 100     8.00 45.51   structural gene/enzymes
82 Teosinte branched 1 (tb1) AF415063 475 ZM AF466204 871 SB 79.8     4.00 37.29   regulatory
83 Sh2 M81603 330 ZM M81603 330 SB 93.4     2.00 62.98   starch metabolism
84 Gene X putative transcription factor (X) AF434193 486 ZM AF010283 531 SB 86.8     1.00 33.71   regulatory
85 PEPC E17154 305 ZM X63756 537 SB 93     3.00 28.43   photosynthesis
86 Hydroxy-rich glycoprotein (HGRP) AJ131535 424 ZM X56010 540 SB 87.5     6.00 10.17   structural gene/enzymes
87 Waxy1 X03935 363 ZM X07931 872 HV 87.1     0.00 0.00   starch metabolism
88 Cab1 X14794 472 ZM X12735 873 HV 90.6     1.00 11.60   photosynthesis
89 Starch Synthase AF036891 25 ZM AF234163 874 HV 80.6     0.00 0.00   starch metabolism
90 A1 X05068 376 ZM S69616 778 HV 82.5     1.00 1.87   structural gene/enzymes
91 Beta-amylase (Amy2) AF068119 38 ZM AJ301645 875 HV 76.3     1.00 2.05   starch metabolism
92 chalcone synthase X60204 478 ZM X58339 876 HV 90.8     0.00 0.00   structural gene/enzymes
93 Adh2 X02915 469 ZM X12733 877 HV 79.7     0.00 0.00   structural gene/enzymes
94 Adh1 X04049 470 ZM AF253472 708 HV 97.9     3.00 7.49   structural gene/enzymes
95 Waxy1 X03935 363 ZM AY050175 578 HV 84.5     0.00 0.00   starch metabolism
96 Cab1 X14794 472 ZM M10144 878 HV 89.8     0.00 0.00   photosynthesis
97 Starch Synthase AF036891 25 ZM AF091802 633 HV 81.7     0.00 0.00   starch metabolism
98 A1 X05068 376 ZM AF434703 607 HV 76.8     0.00 0.00   structural gene/enzymes
99 Histone H3 M13379 319 ZM X00937 595 HV 100     0.00 0.00   housekeeping
100 Starch branching enzyme (Sbe1) AF072724 439 ZM AJ237897 630 HV 82.2     2.00 2.58   starch metabolism
101 A1 U70541 827 OS AF010283 531 SB 84.4     0.00 0.00   structural gene/enzymes
102 Adh1 AF172282 808 OS X04049 470 SB 97.6     5.00 9.70   structural gene/enzymes
103 Teosinte branched 1 (tb1) AY043215 868 OS AF466204 871 SB 61.7     2.00 36.71   regulatory
104 Sh2 AF101045 842 OS M81603 330 SB 100     10.00 17.03   starch metabolism
105 Gene X putative transcription factor (X) AF101045 842 OS AF010283 531 SB 76     0.00 0.00   regulatory
106 PEPC AP003052 801 OS X63756 537 SB 86.2     0.00 0.00   photosynthesis
107 Hydroxy-rich glycoprotein (HGRP) X61280.1 869 OS X56010 540 SB 60.8     1.00 2.24   structural gene/enzymes
108 Waxy1 AF141954 840 OS X07931 872 HV 87.7     0.00 0.00   starch metabolism
109 Cab1 AF162665 797 OS X12735 873 HV 88.8     0.00 0.00   photosynthesis
110 Starch Synthase D38221 846 OS AF234163 874 HV 80.3     1.00 20.86   starch metabolism
111 A1 U70541* 827 OS S69616 778 HV 82.8     0.00 0.00   structural gene/enzymes
112 Beta-amylase (Amy2) L10345.1 870 OS AJ301645 875 HV 85.2     1.00 3.05   starch metabolism
113 chalcone synthase AP003380 818 OS X58339 876 HV 95.2     1.00 1.30   structural gene/enzymes
114 Adh2 AF172282 808 OS X12733 877 HV 90.8     0.00 0.00   structural gene/enzymes
115 Adh1 AF172282 808 OS AF253472 708 HV 97.6     3.00 7.69   structural gene/enzymes
116 Waxy1 AF141954 840 OS AY050175 578 TA 84.7     0.00 0.00   starch metabolism
117 Starch Synthase D38221 846 OS AF091802 633 TA 89.9     0.00 0.00   starch metabolism
118 A1 U70541* 827 OS AF434703 607 TA 77     0.00 0.00   structural gene/enzymes
119 Histone H3 AB026295 785 OS X00937 595 TA 100     0.00 0.00   housekeeping
120 Starch branching enzyme (Sbe1) D10838 843 OS AJ237897 630 TA 80.2     2.00 2.78   starch metabolism
121 A1 AF010283 531 SB S69616 778 HV 86.9     0.00 0.00   structural gene/enzymes
122 Adh1 X04049 470 SB AF253472 708 HV 97.9     3.00 6.39   structural gene/enzymes
123 A1 AF010283 531 SB AF434703 607 TA 81.1     0.00 0.00   structural gene/enzymes
124 Waxy1 X07931 872 HV AY050175 578 TA 95.1     0.00 0.00   starch metabolism
125 Cab1 X12735 873 HV M10144 878 TA 89.9     0.00 0.00   photosynthesis
126 Starch Synthase AF234163 874 HV AF091802 633 TA 99.1     4.00 17.69   starch metabolism
127 A1 S69616 778 HV AF434703 607 TA 88.5     7.00 50.24   structural gene/enzymes
128 Beta-amylase (Amy2) AJ301645 875 HV X98504 880 TA 98     1.00 38.30   starch metabolism
129 sulfate transportor AF075270 685 HV AJ238224 881 TA 96.7     8.00 78.50   structural gene/enzymes
130 Amy2 AJ301645 875 HV AF13577 655 TA 78.8     4.00 59.60   structural gene/enzymes